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Rick Davis

William Neal Reynolds Distinguished Professor Emeritus

Headhouse Unit 4 At Method 217

Bio

TEACHING:

PP790-004/Special Topics: Phytonematology (formerly PP504) – 3 credits, Spring of alternate years



Prerequisite: PP 315 or Consent of Instructor.  I am the lead instructor for this introductory course in nematology. Phytonematodes are microscopic worms (often less than 1mm long) that are soil-dwelling, and they mainly attack plant roots. The course is designed for students with a background in plant pathology, biology, or agricultural sciences, however no prior experience in plant pathology or nematology is required (PP 315 or equivalent is preferred). Graduate students in majors related to plant pathology are welcome, and Phytonematology is open to upper-level undergraduate students with consent of the instructor. Strong emphasis is placed on the integration of classical nematology with modern approaches, from nematode identification and control to molecular biology and host-parasite interactions.  The class consists of 3 lectures per week — the first half of the course includes comprehensive background information in phytonematology provided by the instructor and then moves towards examinations of topic-based literature as selected and presented by students in the second half of the course.

PP502/Plant Disease: Methods & Diagnosis – 2 credits, Fall semester every year

Dr. Tim Sit is the primary instructor of this course that covers methods and diagnosis for plant diseases induced by four major pathogen groups – bacteria, fungi, nematodes, and viruses.  I teach the nematology portion of PP 502 that provides the basics in diagnosing and working with plant nematodes.

PP707/Host-Microbe Interactions – 3 credits, Spring semester every year

Dr. Ralph Dean is the primary instructor of this course that covers the fundamentals of cellular and molecular interactions of plant hosts with different pathogen groups  I teach the nematology portion of PP 707 that provides the basics in plant-nematode interactions on both the cellular and molecular levels.

RESEARCH:

Our lab’s primary interest is with plant-parasitic (phyto)nematodes, but we are also interested in all aspects of host-parasite interactions. The main objective of our research is to combine information that we generate in both basic and applied investigations towards the goal of improving the control of plant-parasitic nematodes in agriculture. Our present research projects involve:

  1. Identification and functional analyses of secreted nematode effector proteins
  2. Nematode genomics emphasizing parasitism gene expression and epigenetics
  3. Plant host cellular and molecular targets and responses to nematode effectors
  4. Identification of virus endosymbionts within plant nematodes
  5. Management of plant nematodes, both conventional and novel

The majority of our research centers around the soybean cyst nematode (SCN), Heterodera glycines, the sugarbeet cyst nematode (BCN), Heterodera schachtii, the tobacco cyst nematode (TCN), Globodera tabacum, and the root-knot nematodes,Meloidogyne spp. Cyst nematodes have a very narrow plant host range, while root-knot nematodes have a very wide range of host plant species. Both types of nematodes enter plant roots completely and transform selected plant cells into elaborate feeding sites that act as permanent nutrient sinks for the rest of the nematode’s sedentary life cycle. Cyst and root-knot nematodes cause billions of dollars in damage each year to many different crops world-wide, and environmentally-safe means of their control are in great demand.

Our primary investigations focus on the effector (parasitism) proteins secreted from cyst nematodes and root-knot nematodes that are critical in the plant infection process, and we have employed multiple approaches to isolate the “parasitism genes” (Davis et al., 2000, 2004, 2008) that encode these molecular signals.  Greater than fifty parasitism genes have each been isolated from cyst and root-knot nematodes to date that include a majority of encoded novel effector proteins and limited similarities in the effector repertoires between cyst and root-knot nematodes. Current investigations use Arabidopsis thaliana as a plant model for the functional analyses of nematode effector proteins and their roles in plant parasitism by nematodes. Assays include analyses of effector expression in plants, interactions with host proteins. and parasitism gene silencing using plant host-derived RNA interference (RNAi). Some research highlights include:

  1. Discovery of the first endogenous cellulases in animals – cyst nematodes (Smant et al., 1998)
  2. Early evidence for horizontal gene transfer (HGT) from microbes to nematodes (Smant et al., 1998; Yan et al., 1998, 2001; Davis et al., 2000)
  3. First report of a nematode effector protein that functionally mimics the bioactive plant CLAVATA3/ESR (CLE) peptides (Wang et al., 2001, 2005; Mitchum et al., 2008, 2012)
  4. Use of plant host-derived RNAi to silence target nematode parasitism genes and reduce nematode infection of plants (Huang et al., 2006; Sindhu et al., 2008; Patel et al., 2008, 2010).
  5. Identification of novel viruses that infect plant nematodes (Ruark et al., 2017, 2018, 2020).

Our lab collaborates closely on many projects with selected U.S and international scientists to form an International Molecular Plant-Nematode Interactions Group that includes the labs of Thomas J. Baum of Iowa State University; Richard S. Hussey of the University of Georgia; Melissa G. Mitchum of the University of Georgia; Tarek Hewezi of the University of Tennessee; Xiaohong Wang of Cornell University; Martin Wubben of USDA-ARS at Mississippi State; Godlieve Gheysen of the University of Gent, Belgium; John T. Jones of the James Hutton Institute, Scotland; Pierre Abad and Bruno Favery of INRA, France; Jaap Bakker, Aska Goverse and Geert Smant of Wageningen University, The Netherlands.

Selected Review and Chapters:

  • Mitchum, M.G., Hussey, R.S., Baum, T.J., Wang, X., Elling, A.A., Wubben, M., Davis, E.L. 2013. Tansley Review – Nematode effector proteins: an emerging paradigm of parasitism. New Phytologist 199:879-894.
  • Mitchum, M.G., X. Wang, J. Wang, and E.L. Davis. 2012.  Role of nematode peptides and other small molecules in plant parasitism. Annual Review of Phytopathology 50:175-195.
  • Rosso, M.N., R.S. Hussey, E.L. Davis, G. Smant, T.J. Baum, P. Abad, and M.G. Mitchum. 2012. Nematode effector proteins: Targets and functions in plant parasitism. Pp 329-356 In Martin, F., and S. Kamoun, eds. Effectors in Plant-Microbe Interactions. Wiley-Blackwell, NY.
  • Davis, E.L., R.S. Hussey, and Baum, T.J.  2009. Parasitism genes: what they reveal about parasitism. Pp 15-44 In: Berg, R.H. and Taylor, C.G., eds. Plant Cell Monographs: Cell Biology of Plant-Nematode Interactions, Springer, Heidelberg.
  • Davis, E.L., R.S. Hussey, M.G. Mitchum, and Baum, T.J.  2008. Parasitism proteins in nematode-plant interactions. Current Opinion in Plant Biology 11:360-366.
  • Mitchum, M.G., X. Wang, and E.L. Davis.  2008.  Diverse and conserved roles of CLE peptides. Current Opinion in Plant Biology11(1):75-81.
  • Hudson, L.H., C.H. Haigler, and E.L. Davis. 2006. Analysis of cell wall synthesis in feeding cells formed by root-knot nematodes.Pp 281-286 In Sanchez, F., C. Quinto, I.M. Lopez-Lara, O. Geiger, eds., Biology of Plant-Microbe Interactions, Volume 5, ISMPI, St. Paul, MN.
  • Davis, E.L., and M.G. Mitchum. 2005.  Nematodes: sophisticated parasites of legumes.  Plant Physiology 137:1182-1188.
  • Davis, E.L., R.S. Hussey, and T.J. Baum.  2004.  Getting to the roots of parasitism by nematodes. Trends in Parasitology 20 (3):134-141.
  • Davis, E. L., R. S. Hussey, T. J. Baum, J. Bakker, A. Schots, M. N. Rosso, and P. Abad.  2000. Nematode parasitism genes. Annual Review of Phytopathology 38: 365-396.
  • Davis, E. L. and A. E. MacGuidwin.  2000.  Lesion nematode disease.  Plant Health Instructor. DOI:10.1094/PHI-I-2000-1030-02.http://www.apsnet.org/edcenter/intropp/lessons/Nematodes/Pages/LesionNem…
  • Davis, E. L. and G. L. Tylka.  2000.  Soybean cyst nematode disease.  Plant Health Instructor. DOI:10.1094/PHI-I-2000-0725-01. http://www.apsnet.org/edcenter/intropp/lessons/Nematodes/Pages/SoyCystNe…

Area(s) of Expertise

Plant-parasitic nematodes and host-parasite interactions

Publications

View all publications 

Grants

Date: 02/01/20 - 1/31/23
Amount: $40,744.00
Funding Agencies: Corn Growers Association of NC, Inc.

Arbuscular mycorrhiza (AM) are soil-borne fungi that form intimate symbiotic associations with the roots of most land plants. AM fungi act as extensions of the root system, increasing the root ����������������uptake area��������������� more than 1000-fold and considerably improving the plant's ability to acquire water and nutrients from the soil. AM fungi therefore substantially improve the host plant������������������s access to macronutrients including phosphorous (P), potassium (K) and nitrogen (N), and micronutrients. This proposal describes a project to understand the genetics controlling the association between corn and AM fungi. If successful, this will facilitate the increased used of AM fungi in corn cultivation and help reduce the expensive and ecologically-damaging use of fertilizers.

Date: 11/01/19 - 1/31/23
Amount: $141,125.00
Funding Agencies: NC Tobacco Trust Fund Commission

The North Carolina Biotechnology Center������������������s Crop Commercialization Program (CCP) will coordinate and manage research efforts related to assessing weeds and diseases damaging to stevia production and evaluating the efficacy of biocontrol agents and products in greenhouse and field trials. The research will result in an organic disease and weed management strategy for stevia and preliminary data that will be submitted to the IR4 program for product labeling. Current and future stevia growers, as well as stevia processing companies, will directly benefit from the research, as the outcomes will help ease production management and financial hurdles for growing organic stevia in North Carolina.

Date: 08/06/20 - 12/05/22
Amount: $76,500.00
Funding Agencies: Golden LEAF Foundation

The Guava root-knot nematode (GRKN), Meloidogyne enterolobii, is an invasive and highly aggressive soilborne pathogen. GRKN overcomes all known crop resistance genes that are effective in controlling other RKN species, and thus represents a significant threat to agricultural production in NC. The threat of GRKN to the NC sweetpotato industry and the communities reliant upon the industry is estimated at 95,000 harvested acres worth $342 million. Multifaceted research of chemical control and screening for cultivar resistance is needed to investigate solutions to this problem. However, a significant hindrance to such research lies in identifying suitable field locations with sufficient GRKN populations to perform the work. This project aims to establish a contained research farm infested with GRKN. The proposed farm would allow for management studies and the ability to screen sweetpotato, soybean, tobacco, and vegetable cultivars under field conditions. To reduce the risk of accidental movement of GRKN to other sites, the farm will be enclosed in fencing, with dedicated equipment and storage building, and a decontamination station.

Date: 11/27/18 - 9/30/22
Amount: $2,467,316.00
Funding Agencies: Bill and Melinda Gates Foundation

Smallholder farming practices in sub-Saharan Africa (SSA) include land-raised seed (piece) use, continuous cultivation (often monoculture) with limited inputs, and virtually non-existent seed (piece) treatment techniques. Yam (Dioscorea spp.) is the primary example of this cropping system and is an extremely important and valuable crop for smallholder farmers in SSA. These practices result in nutrient-depleted soils, nematode infestation, and ultimately low crop yields. Reducing the nematode population in crop soil will dramatically increase crop yield and quality. In many cases, smallholder farmers in SSA lose greater than 50% of their crop to plant-parasitic nematodes, primarily due to lack of available and affordable control options. For this BMG GCE Phase III proposal, we will build upon our promising results from Phase II trials, including increased yields and higher tuber quality and storability for both yam and potato, and use our expertise and connections for pulping banana fiber to validate and prepare for commercialization a developing-world transferable product platform enabling a field deployable paper-like seed (piece) treatment to combat plant pathogenic nematodes. In addition, this platform will be amenable to delivering other crop production moieties, including natural products and oils, necessary minerals and nutrients, or insecticides and fungicides, with its application. Our laboratories������������������ expertise in nematology and lignocellulosic fibrous materials enables us to target the delivery of beneficial small molecules during seed (piece) germination and plant establishment. Importantly the incorporation of active ingredients into a lignocellulose matrix, such as banana tissue paper, allows for widespread distribution of crop protection agents without interfering in smallholder farming practices. The shelf-stable light-weight banana tissue paper can be applied at the point of seed (piece) planting where farmers can use the concept of ����������������wrap and plant��������������� with their own seeds/pieces. Our ���������������wrap and plant������������������ product will be an ����������������active��������������� paper sheet pretreated with ultralow concentrations of active nematicidal ingredient to simply wrap and protect the seed (piece) at planting. The localization of active ingredients carried directly within the paper targets specific plant pathogenic nematodes versus beneficial organisms. Nematodes are primarily a seedling disease, so protection early is critical to the success of the crop, although post harvest losses do occur in yam due to the yam nematode (Scutellonema bradys). Reduction in nematode populations by deploying the ���������������wrap and plant������������������ product protects yam from significant infections that may lead to these post-harvest losses. Our ultimate goal is to validate the ���������������wrap and plant������������������ product in Phase III and to translate the product manufacture to a regional African company for commercialization and distribution.

Date: 07/01/20 - 6/30/21
Amount: $19,994.00
Funding Agencies: USDA - Agriculture Research Service (ARS)

Pathogens that are spread by insects or wind pose a community wide threat to cotton production. Methods to forecast inoculum exposure would allow growers to take timely preventative actions such as: delayed planting, resistant varieties, selective fungicides, crop growth regulators, irrigation management, targeted rotations and only where necessary - limited tillage. The NMPTI is foundational for leveraging existing human and animal infectious decision support tools for agriculture. Adaptation of these tools for key diseases of cotton will facilitate disease management and preventive/mitigative actions and planning for disease prevention. These tools offer decision support at varying temporal and spatial scales and individual tools can be used at different points along the spectrum of crop disease surveillance, from early detection to outbreak management to post harvest investigations.

Date: 04/01/19 - 3/31/21
Amount: $65,000.00
Funding Agencies: Golden LEAF Foundation

The invasive guava root-knot nematode (GRKN), Meloidogyne enterolobii, was discovered in NC cotton fields in late 2011 and has now been detected in soybean, cotton, tobacco, and sweetpotato fields in eight eastern NC counties. GRKN is more aggressive than other RKN species, it overcomes all known crop resistances to RKN, and few options to reduce the damage in NC crops are currently known. The threat to NC sweetpotato industries and the communities they serve, currently estimated at 95,000 harvested acres worth $342 million, is of particular concern because of potential crop damage and interstate commerce restrictions imposed by recent state GRKN quarantines. The proposed project seeks relatively rapid solutions to limit GRKN damage in NC sweetpotatoes by field evaluation of potential nematicides for GRKN control while more long-term integrative management options are explored. An extension to the current GRKN detection survey into NC soybean and tobacco crops will also be implemented.

Date: 02/01/19 - 1/31/20
Amount: $4,000.00
Funding Agencies: Corn Growers Association of NC, Inc.

This proposal describes the preliminary steps in a project to identify and characterize genes conferring resistance to the bull-whip phenotype associated with calcium deficiency. Calcium uptake is affected by a number of factors including water availability and uptake, pH, salt levels and the presence of cations such as magnesium and aluminum. While bull-whip symptoms are rarely seen in the field in North Carolina, it is likely that the genes associated with bull-whip resistance play fundamental roles in nutrient and water uptake in the plant. So by using the bull-whip phenotype as a convenient indicator of nutrient or water stress we hope to identify genes that play a role in important agronomic traits such as drought resistance, salt and aluminum tolerance and nutrient uptake.

Date: 09/01/17 - 8/31/19
Amount: $263,013.00
Funding Agencies: Animal and Plant Health Inspection Service (APHIS)

The Micropropagation and Repository Unit (MPRU) at North Carolina State University (NCSU) is currently the National Clean Plant Network center that produces, maintains and distributes pathogen-tested G1 material of berry crops (strawberry, blackberry, raspberry and blueberry), sweetpotato to industry and researchers in the U.S., and additionally proposes to develop capacity in muscadine grapes. This project will ensure that high quality plant material will be developed and distributed under the standards established by NCPN.

Date: 02/01/18 - 1/31/19
Amount: $6,000.00
Funding Agencies: Corn Growers Association of NC, Inc.

We have created a set of maize populations designed for the identification of maize disease resistance genes. We have characterized these populations for resistance to three fungal disease and have identified resistance genes which confer resistance to more than one disease. During 2018 we will confirm the effects of these genes and refine our knowledge of their genomic positions. We expect these genes to be of particular utility in the southeastern US.

Date: 02/01/18 - 1/31/19
Amount: $4,000.00
Funding Agencies: Corn Growers Association of NC, Inc.

We have created a set of corn populations, consisting of 1749 lines, designed for the identification of maize disease resistance genes. We have characterized these populations for resistance to three fungal diseases and have identified resistance genes which confer resistance to more than one disease. We are requesting funding to enable the deposition of these lines in the maize genetic stock center so they will be available for use by other scientists interested in characterizing disease resistance in corn.


View all grants 
  • American Phytopathological Society Fellow (2019)
  • Society of Nematologists Fellow (2012)
  • American Phytopathological Society, Ruth Allen Award (2006)