Joseph Gage
JG
Bio
Research: Joe Gage’s research program is focused on linking crop genomic and phenomics to understand how to develop more resilient and productive crop varieties. Current projects include studying how sequence variation controls gene regulation; how gene regulation contributes to genotype-by-environment interactions; and novel methods for processing and interpreting high throughput phenotyping data.
Publications
- Genomes to fields 2024 maize genotype by environment prediction competition , BMC Research Notes (2026)
- HyARQ v1.0.0 validation data , Zenodo (2026)
- HyARQ v1.0.0 validation data , Zenodo (2026)
- HyARQ: a Snakemake workflow for allele-specific read counting and quality control in F1 hybrids , Zenodo (2026)
- HyARQ: a Snakemake workflow for allele-specific read counting and quality control in F1 hybrids , Zenodo (2026)
- Ribosome stalling position, spacing, and A-site occupancy impact translation and co-translational mRNA decay in plants , bioRxiv (Cold Spring Harbor Laboratory) (2026)
- Ribosome stalling position, spacing, and A-site occupancy impact translation and cotranslational mRNA decay in plants , Proceedings of the National Academy of Sciences (2026)
- Investigating GERMs: How Genotype, Environment, and Rhizosphere Microbiome interactions underlie heat response in maize and sorghum , bioRxiv (Cold Spring Harbor Laboratory) (2025)
- Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates , Genetics (2024)
- Swin-Roleaf: A New Method for Characterizing Leaf Azimuth Angle in Large-Scale Maize Plants , Computers and Electronics in Agriculture (2024)